Converts genomic intervals between coordinate conventions, normalises and compares variant representations, and detects assembly or contig-naming mismatches before they corrupt an analysis. Used whenever coordinates cross a format, tool, or assembly boundary - converting between BED, GFF/GTF, VCF, SAM/BAM, WIG, PSL, genePred, Picard interval_list, or region strings; reconciling 0-based half-open with 1-based inclusive; left-aligning or trimming indels; checking whether two variant records describe the same change; mapping genomic to transcript, CDS, or protein positions; auditing a BED/GTF/VCF for convention violations; or diagnosing GRCh37 vs hg19 vs GRCh38 vs T2T, chr-prefix, and liftover problems. Triggers include "off by one", "0-based", "1-based", "half-open", "coordinate system", "left-align", "normalize variant", "bcftools norm", "chr prefix", "wrong genome build", "liftover", "REF mismatch", and "HGVS".
○ declared by the publisher, as-is
Safety
BB: 4 or more lows, or any medium2 severity-bearing
Safety · gatev1.3 · = 92ace75 · assessed 2w ago
B2 severity-bearing
Graded from 2 severity-bearing findings on this release.
A gate; it passes or fails, never weighed against price or quality.
Reliability & Quality
n/anot yet graded
Reliability & Qualityv1.3 · = 92ace75 · assessed 2w ago
n/anot yet graded
Rows exist, but none carries a severity; no grade has been earned yet.
Findings with severity, graded on the same letter scale as safety.
Cost
n/anot assessed
Costv1.3 · = 92ace75 · assessed 2w ago
n/anot assessed
Not assessed; no producer has emitted into this category. An absence, not a zero.
Declared external service dependencies. Never a monetary figure.
not assessed
Popularity
4335Forks
Popularity · not a figurev1.3 · = 92ace75 · assessed 2w ago
4335Forks
Read off the linked repository, not off this record. It carries no verdict and enters no grade.
Context read off the linked repository. It enters no ranking and no grade.
Performance tested for◌ not assessed
no controlled task evaluation on this release
Repo★ 48.2k○·4.3k forks·203 watchers·23 open issues·last commit 4d old when scanned
◌ Vettd does not install assets; this record describes a copy you obtain yourself.
Custody chainSource ↗○ linked, not verified by Vettd
k-dense-ai◐→k-dense-ai/scientific-agent-skills○→v1.3 = 92ace75◐→sha256:7eae…0b48◐→signature △ not assessed|MIT○record 7dbd1d29-dec9-4f74-8bf6-b46105893e66 · live
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◌Internal reference resolution completednothing foundAll body-referenced paths under references/, scripts/, and assets/ resolved in the bundle.vettd · scan · 2wnothing found
Not assessed; no producer has emitted into cost for this asset. That is different from a check that ran and found nothing, which the record would carry as a row of its own.
▪Declared environment assumptionsreadvettd · scan · 2wRequires Python 3.11+. Scripts use only the standard library - no third-party packages and no network access. Variant normalisation needs an uncompressed reference FASTA with exact contig names; .fai enables indexed access. Without .fai the entire FASTA is loaded into memory.
genomic-coordinates v1.3 · = 92ace75 · assessed 2w ago /
31 signals · 6 categories
Safety
▲References external URL — review for indirect prompt injection riskMedium
▲Code uses search/grep patterns but Grep tool not in allowed-toolsLow
◌Secrets scan passednothing found
◌behavioral scan passednothing found
◌Name validation passednothing found
Reliability & Quality
◌Internal reference resolution completednothing found
▪Checklist patternabsent
▪Description usage contextabsent
▪Examplespresent
▪Gotchas sectionabsent
▪Step-by-step workflowabsent
▪Validation looppresent
Performance
▪Progressive disclosurepresent
●Static context tokens2839
Compatibility
▪CLI helppresent
▪Declared environment assumptionsRequires Python 3.11+. Scripts use only the standard library - no third-party packages and no network access. Variant normalisation needs an uncompressed reference FASTA with exact contig names; .fai enables indexed access. Without .fai the entire FASTA is loaded into memory.
assessed2w ago · Cisco AI Defense · Vettd core● current
source stateThe source matches what was scanned. No changes detected.Up to date
re-check policyre-checked against the upstream source on the scheduler's cadencenext check in 23h
re-run whena new release ships, the upstream source changes, or the scanner ruleset is revisedauto-scheduled
Limitations & open conflicts
limitationCost is not assessed: behaviour there is unmeasured, not clean△ gap
limitationReliability & Quality carries rows but no severity-bearing one: nothing has been graded there△ gap
conflictno two sources report the same quantity on this record
Verify: does this record describe your copy?
What record 7dbd1d29-dec9-4f74-8bf6-b46105893e66 covers
scannerv11● current
validityassessed 2w ago · Up to date
$vettd scan folder <path>
this record was taken at digest sha256:7eae514a4b7f… compare it against the digest your own scan prints
Reproduce: re-run the evidence yourself
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runs the same scanners against your own copy; the published record is never overwritten
How this record comparesagainst other published records · full comparison →
Signal kinds
▲ finding: something to act on, carries a severity● measurement: a reproducible quantityƒ estimate: inferred from a sample▪ fact: read directly off the artifact◆ classification: assigned from a taxonomy◌ nothing found: a producer looked and emitted no object◇ context only: described, never graded
Custody marks
◐ computed by vettd○ declared by the publisher, as-is△ not assessed: nothing looked
Weigh genomic-coordinates against other published skills: the safety grade, its finding counts and each category’s verdict, one row apiece. The full comparison page carries every signal and framework coverage.