GPTomics/bioSkills

Last imported 2w ago

ChangedOct 22, 2026

The source has changed since this result was produced. The evidence may not reflect the current state.

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Skills Assessed

Graded A or B

Graded C or F

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Skills Assessed

bio-workflows-hic-pipeline

End-to-end Hi-C analysis workflow from FASTQ to compartments, TADs, and loops, with the decision of WHICH features the sequencing depth can support. Covers pairtools read-pair processing and library QC, cooler matrices, ICE balancing and distance-decay expected, A/B compartments, TAD boundaries, loop calling, and the routing of HiChIP/PLAC-seq/Capture Hi-C to protein-directed loop callers. Use when processing Hi-C data end to end, deciding a resolution for a given depth, or choosing between bulk-Hi-C and protein-directed loop calling.

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