{"id":"cmuximzmr0sxyad07t9fpwlfv","slug":"dnanexus-integration","publicId":"a8f68da3-2511-4925-8b86-bef2a4e0aa22","name":"dnanexus-integration","description":"Builds and operates reproducible genomics workloads on DNAnexus with the dx CLI, dxpy, apps/applets, native workflows, dxCompiler, and Nextflow. Supports DNAnexus data transfers, dxapp.json development, execution monitoring, workflow import, and project automation.","version":"2.3","author":"k-dense-ai","license":"MIT","compatibility":"Requires a DNAnexus account, network access, Python 3.11+, and dx-toolkit/dxpy; some workflow and infrastructure features require organization licenses or policies.","status":"completed","overallGrade":"B","scannerVersion":11,"fileCount":12,"hasSkillMd":true,"hasScripts":true,"hasReferences":true,"hasEvals":false,"hasAssets":false,"sourceType":"github","sourceUrl":"https://github.com/k-dense-ai/scientific-agent-skills/tree/main/skills/dnanexus-integration","createdAt":"2026-10-07T02:56:09.700Z","completedAt":"2026-10-07T02:56:09.697Z","visibility":"public","publishedAt":"2026-09-10T21:05:37.790Z","category":"","frameworks":[],"badgeStatus":"conditional","downloadCount":0,"verdictRationale":{"summary":"Skill has warnings: 1 warning in security or structure checks.","verdict":"warn","scanners":[{"source":"vettd","weight":1,"verdict":"warn"},{"source":"cisco","weight":0.8,"verdict":"pass"}],"consensus":"warn","warnTriggers":["References external URL — review for indirect prompt injection risk"],"policyVersion":"consensus-v1","hardFailTriggers":[]},"verdictPolicyVersion":"consensus-v1","skillId":"cmtw0o1wqbaliad07kcnz9mew","findings":[{"id":"cmuximzmr0sxzad072amxx0gq","source":"vettd","category":"security","label":"References external URL — review for indirect prompt injection risk","detail":"External URL(s) detected in SKILL.md — referenced content can change after audit","severity":"medium","ruleId":"VTD-0088","owaspLlmCategory":null,"intent":null,"chainId":null,"fingerprint":"42638a8b7e9fc5df27449992eaebc724","filepath":"SKILL.md"}],"scannerRuns":[{"source":"cisco","status":"success","verdict":null,"grade":"A","findingCount":0,"criticalCount":0,"highCount":0},{"source":"vettd","status":"success","verdict":null,"grade":"B","findingCount":1,"criticalCount":0,"highCount":0}],"user":{"name":"Kris Mondlane","image":"https://avatars.githubusercontent.com/u/237055?v=4"},"repository":{"owner":"k-dense-ai","name":"scientific-agent-skills"},"freshness":{"status":"verified_unchanged","reason":null,"retryable":false,"renamedTo":null,"lastCheckedAt":"2026-10-22T04:11:39.608Z","lastVerifiedAt":"2026-10-22T04:11:39.608Z","lastChangeDetectedAt":"2026-10-06T08:56:24.278Z","scannedHash":"e81f4d414d086084bcb15ac0e9a6ff63f72e554c","latestUpstreamHash":"e81f4d414d086084bcb15ac0e9a6ff63f72e554c","nextCheckDueAt":"2026-10-23T06:34:26.983Z"},"signalCategories":[{"category":"safety","label":"Safety","form":"graded","verdict":null,"rows":[]},{"category":"reliability","label":"Reliability & Quality","form":"graded","verdict":null,"rows":[]},{"category":"performance","label":"Performance","form":"measured","verdict":{"form":"measured","magnitudes":[{"ruleId":"performance/static-context-tokens","label":"Static context tokens","value":2803,"unit":null,"method":"tiktoken/cl100k_base/skill-md-body"}]},"rows":[{"origin":"signal","id":"cmuximzuu0t01ad07ez4be0pm","subjectType":"skill_audit","subjectId":"cmuximzmr0sxyad07t9fpwlfv","relatedType":"","relatedId":"","dataCategory":"performance","sourceClass":"scan","source":"vettd","ruleId":"performance/progressive-disclosure","severity":null,"label":"Progressive disclosure","detail":null,"valueNum":null,"valueText":"present","unit":null,"method":null,"derivation":"read","confidence":null,"sampleSize":null,"synthetic":false,"firstParty":true,"observedAt":"2026-10-07T02:56:06.000Z","payload":null},{"origin":"signal","id":"cmuximzp60sybad078rajoxbw","subjectType":"skill_audit","subjectId":"cmuximzmr0sxyad07t9fpwlfv","relatedType":"","relatedId":"","dataCategory":"performance","sourceClass":"scan","source":"vettd","ruleId":"performance/static-context-tokens","severity":null,"label":"Static context tokens","detail":null,"valueNum":2803,"valueText":null,"unit":null,"method":"tiktoken/cl100k_base/skill-md-body","derivation":null,"confidence":null,"sampleSize":null,"synthetic":false,"firstParty":true,"observedAt":"2026-10-07T02:56:06.000Z","payload":null}]},{"category":"cost","label":"Cost","form":"measured","verdict":null,"rows":[]},{"category":"compatibility","label":"Compatibility","form":"unjudged","verdict":{"form":"unjudged"},"rows":[{"origin":"signal","id":"cmuximzuz0t05ad07nno6rc1p","subjectType":"skill_audit","subjectId":"cmuximzmr0sxyad07t9fpwlfv","relatedType":"","relatedId":"","dataCategory":"compatibility","sourceClass":"scan","source":"vettd","ruleId":"compatibility/cli-help","severity":null,"label":"CLI help","detail":null,"valueNum":null,"valueText":"present","unit":null,"method":null,"derivation":"read","confidence":null,"sampleSize":null,"synthetic":false,"firstParty":true,"observedAt":"2026-10-07T02:56:06.000Z","payload":null},{"origin":"signal","id":"cmuximzwr0t09ad07een4mh3t","subjectType":"skill_audit","subjectId":"cmuximzmr0sxyad07t9fpwlfv","relatedType":"","relatedId":"","dataCategory":"compatibility","sourceClass":"scan","source":"vettd","ruleId":"compatibility/structured-output","severity":null,"label":"Structured output","detail":null,"valueNum":null,"valueText":"present","unit":null,"method":null,"derivation":"read","confidence":null,"sampleSize":null,"synthetic":false,"firstParty":true,"observedAt":"2026-10-07T02:56:06.000Z","payload":null},{"origin":"signal","id":"cmuximzwz0t0dad07pykm5hf1","subjectType":"skill_audit","subjectId":"cmuximzmr0sxyad07t9fpwlfv","relatedType":"","relatedId":"","dataCategory":"compatibility","sourceClass":"scan","source":"vettd","ruleId":"compatibility/unpinned-dependencies","severity":"low","label":"Unpinned dependency versions","detail":"Pin dependency versions for reproducibility (e.g., >=4.12,<5 instead of >=4.12)","valueNum":null,"valueText":null,"unit":null,"method":null,"derivation":null,"confidence":null,"sampleSize":null,"synthetic":false,"firstParty":true,"observedAt":"2026-10-07T02:56:06.000Z","payload":null},{"origin":"signal","id":"cmuximzpd0sygad07qo5n3msx","subjectType":"skill_audit","subjectId":"cmuximzmr0sxyad07t9fpwlfv","relatedType":"","relatedId":"","dataCategory":"compatibility","sourceClass":"scan","source":"vettd","ruleId":"compatibility/declared-environment-assumptions","severity":null,"label":"Declared environment assumptions","detail":null,"valueNum":null,"valueText":"Requires a DNAnexus account, network access, Python 3.11+, and dx-toolkit/dxpy; some workflow and infrastructure features require organization licenses or policies.","unit":null,"method":null,"derivation":"read","confidence":null,"sampleSize":null,"synthetic":false,"firstParty":true,"observedAt":"2026-10-07T02:56:06.000Z","payload":null},{"origin":"signal","id":"cmuximzrq0sz5ad07fbgza7uo","subjectType":"skill_audit","subjectId":"cmuximzmr0sxyad07t9fpwlfv","relatedType":"","relatedId":"","dataCategory":"compatibility","sourceClass":"scan","source":"vettd","ruleId":"compatibility/declared-name","severity":null,"label":"Declared skill name","detail":null,"valueNum":null,"valueText":"dnanexus-integration","unit":null,"method":null,"derivation":"read","confidence":null,"sampleSize":null,"synthetic":false,"firstParty":true,"observedAt":"2026-10-07T02:56:06.000Z","payload":null}]},{"category":"sentiment","label":"Popularity","form":"unjudged","verdict":null,"rows":[]},{"category":"characteristics","label":"Characteristics","form":"unjudged","verdict":null,"rows":[]}],"signalCount":27,"publisherSupplied":["name","description","author","version","license"]}